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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
46
ChIP-seq
30
ATAC-seq
5
pCHi-C
4
Hi-C
4
total RNA-seq
2
single cell RNA-seq
Assay category
46
DNA binding
30
DNA accessibility
6
Transcription
4
3D chromatin structure
Target of assay
32
control
14
histone
14
histone modification
9
broad histone mark
5
narrow histone mark
Date released
20
August, 2017
18
August, 2021
13
February, 2023
9
December, 2017
8
February, 2018
6
March, 2020
5
November, 2019
4
February, 2021
4
October, 2019
2
December, 2019
1
August, 2018
1
May, 2021
Available data
291
bam
bigWig
141
fastq
131
tsv
128
bed narrowPeak
40
tagAlign
23
bed bed3+
17
bigBed narrowPeak
7
bedpe bed3+
5
bed bed3
4
bed bedgraph
4
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
91
Homo sapiens
Biosample type
714
tissue
136
primary cell
107
cell line
91
in vitro differentiated cells
5
stem cell
Organ
38
connective tissue
8
embryo
4
epithelium
1
adipose tissue
1
liver
1
pancreas
Project
91
AMP
Genome assembly (visualization)
41
hg19
22
GRCh38
Lab
91
AMP-T2D consortium
42
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
22
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
files.file_type!
bigWig
BIOSAMPLE
ASSAY
91 results
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ChIP-seq
ATAC-seq
pCHi-C
Hi-C
total RNA-seq
single cell RNA-seq
in vitro differentiated cells
adipocyte
20
5
1
neural progenitor cell
8
10
cardiomyocytes (cardiac muscle cell)
1
2
2
2
pancreatic endoderm
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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