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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ATAC-seq
32
ChIP-seq
10
RRBS
3
total RNA-seq
2
DNase-seq
2
Hi-C
2
single cell RNA-seq
1
DNAme array
1
pCHi-C
Assay category
85
DNA accessibility
32
DNA binding
11
DNA methylation
5
Transcription
2
3D chromatin structure
Target of assay
25
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
Date released
57
May, 2020
19
May, 2021
13
August, 2017
12
February, 2023
11
October, 2019
9
July, 2019
8
June, 2019
1
August, 2021
1
February, 2021
1
March, 2020
1
May, 2019
1
November, 2018
1
November, 2020
1
September, 2018
Available data
429
bam
bigWig
240
fastq
181
bed narrowPeak
168
tsv
109
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
136
Homo sapiens
Biosample type
714
tissue
136
primary cell
107
cell line
91
in vitro differentiated cells
5
stem cell
Organ
33
epithelium
12
pancreas
8
kidney
8
vasculature
7
blood vessel
7
vein
6
connective tissue
3
heart
3
liver
3
musculature of body
2
eye
1
brain
Project
136
AMP
Genome assembly (visualization)
29
hg19
16
GRCh38
Lab
314
Klaus Kaestner, Upenn
136
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
ITG
Audit category:
15
inconsistent ontology term
1
audit script error
files.file_type!
bigWig
BIOSAMPLE
ASSAY
136 results
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ATAC-seq
ChIP-seq
RRBS
total RNA-seq
DNase-seq
Hi-C
single cell RNA-seq
DNAme array
pCHi-C
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
CD4-positive, alpha-beta memory T cell
22
monocyte
13
1
1
1
macrophage
11
endothelial cell of umbilical vein
5
2
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