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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
955
total RNA-seq
867
ChIP-seq
178
DNase-seq
131
ATAC-seq
107
single cell RNA-seq
87
RNA microarray
27
WGBS
24
pCHi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
Hi-C
3
snDrop-seq
2
snATAC-seq
Assay category
1078
Transcription
867
DNA binding
315
DNA accessibility
38
DNA methylation
4
3D chromatin structure
Target of assay
593
histone modification
592
histone
309
narrow histone mark
283
broad histone mark
185
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
545
February, 2021
284
August, 2017
241
October, 2019
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
99
August, 2021
82
November, 2017
80
April, 2019
77
February, 2023
77
July, 2019
74
October, 2018
48
December, 2017
39
November, 2019
38
May, 2021
33
March, 2020
26
November, 2018
25
February, 2020
22
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
3
December, 2019
2
January, 2018
2
May, 2022
1
August, 2022
1
May, 2023
Available data
1882
bam
1711
bigWig
1075
tsv
842
bed narrowPeak
561
bigBed narrowPeak
351
fastq
238
tagAlign
211
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
94
txt
25
bed bedMethyl
25
bigBed bedMethyl
9
bedpe bed3+
hic
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2408
Homo sapiens
Biosample type
2416
tissue
614
cell line
522
primary cell
336
in vitro differentiated cells
8
stem cell
Organ
547
connective tissue
488
adipose tissue
440
pancreas
320
liver
270
heart
265
brain
158
bone element
132
blood vessel
132
vasculature
122
limb
110
kidney
80
musculature of body
73
artery
56
eye
43
nerve
25
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2412
AMP
4
T1D
Genome assembly (visualization)
1741
GRCh38
1703
hg19
Lab
2416
AMP-T2D consortium
141
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
hic
BIOSAMPLE
ASSAY
2416 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
small RNA-seq
RRBS
FAIRE-seq
Hi-C
snDrop-seq
snATAC-seq
tissue
islet of Langerhans
286
71
1
34
4
1
1
1
adipose tissue
382
2
3
3
1
liver
147
145
2
1
3
1
1
1
bone element
84
heart left ventricle
3
35
3
2
18
4
1
1
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