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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
RRBS
17
WGBS
16
Hi-C
Assay category
36
DNA methylation
16
3D chromatin structure
Date released
23
July, 2019
10
March, 2020
7
November, 2018
6
August, 2017
4
October, 2019
2
November, 2019
Available data
3187
bam
2859
bigWig
1543
bed narrowPeak
1488
tsv
1163
fastq
1042
bigBed narrowPeak
320
bed broadPeak
314
tagAlign
285
bigBed broadPeak
269
bed bed3+
95
txt
36
bed bedMethyl
36
bigBed bedMethyl
18
bedpe bed3+
16
hic
12
bed bed3
8
csv
5
hdf5
4
bed bedgraph
4
tar
2
ibed
1
tagAlign bed3+
Organism
52
Homo sapiens
Biosample type
34
tissue
12
primary cell
4
in vitro differentiated cells
2
cell line
Organ
11
heart
9
epithelium
9
pancreas
6
musculature of body
5
vasculature
4
blood vessel
4
kidney
4
liver
3
connective tissue
2
adipose tissue
2
brain
2
spleen
2
vein
1
eye
1
limb
1
pericardium
Project
52
AMP
Genome assembly (visualization)
35
hg19
17
GRCh38
Lab
52
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
7
inconsistent ontology term
1
audit script error
BIOSAMPLE
ASSAY
52 results
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RRBS
WGBS
Hi-C
tissue
heart left ventricle
1
2
1
pancreas
1
2
1
heart right ventricle
2
1
adipose tissue
2
aorta
1
1
+ See 12 more…
primary cell
endothelial cell of umbilical vein
2
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
+ See 6 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
EndoC_BH1
1
HepG2
1
See all biosamples
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