Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
DNase-seq
75
ChIP-seq
Assay category
204
DNA accessibility
75
DNA binding
Target of assay
47
transcription factor
28
histone
28
histone modification
14
broad histone mark
14
narrow histone mark
7
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
70
November, 2017
August, 2017
9
November, 2018
9
October, 2019
3
October, 2017
1
November, 2020
Available data
2905
bam
2587
bigWig
1401
bed narrowPeak
1399
tsv
1000
bigBed narrowPeak
876
fastq
279
bed broadPeak
270
bigBed broadPeak
236
bed bed3+
229
tagAlign
95
txt
30
bed bedMethyl
30
bigBed bedMethyl
18
bedpe bed3+
16
hic
12
bed bed3
8
csv
5
hdf5
4
bed bedgraph
4
tar
2
ibed
1
tagAlign bed3+
Organism
279
Homo sapiens
Biosample type
185
tissue
59
cell line
35
primary cell
Organ
78
kidney
63
liver
47
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
8
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
279
AMP
Genome assembly (visualization)
262
GRCh38
256
hg19
Lab
279
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
month_released!
August, 2017
BIOSAMPLE
ASSAY
279 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 42 more…
cell line
HepG2
58
Panc1
1
primary cell
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
+ See 17 more…
See all biosamples
Download