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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
Hi-C
12
ATAC-seq
Assay category
16
3D chromatin structure
12
DNA accessibility
Date released
10
February, 2023
10
March, 2020
4
October, 2019
2
February, 2021
2
November, 2019
Available data
3187
bam
2859
bigWig
1543
bed narrowPeak
1488
tsv
1163
fastq
1042
bigBed narrowPeak
320
bed broadPeak
314
tagAlign
285
bigBed broadPeak
269
bed bed3+
95
txt
36
bed bedMethyl
36
bigBed bedMethyl
18
bedpe bed3+
16
hic
12
bed bed3
8
csv
5
hdf5
4
bed bedgraph
4
tar
2
ibed
1
tagAlign bed3+
Organism
28
Homo sapiens
Biosample type
14
tissue
9
in vitro differentiated cells
3
primary cell
2
cell line
Organ
6
connective tissue
4
bone element
4
skeleton
3
blood vessel
3
epithelium
3
heart
3
pancreas
3
vasculature
2
liver
2
musculature of body
2
vein
1
brain
Project
28
AMP
Genome assembly (visualization)
28
hg19
2
GRCh38
Lab
28
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
5
inconsistent ontology term
1
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
28 results
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Clear Filters
Hi-C
ATAC-seq
tissue
psoas muscle
2
acetabular part of hip bone
1
aorta
1
brain
1
heart
1
+ See 8 more…
in vitro differentiated cells
chondrocyte
5
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
primary cell
endothelial cell of umbilical vein
2
osteoblast
1
cell line
EndoC_BH1
1
HepG2
1
See all biosamples
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