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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
Hi-C
Assay category
14
3D chromatin structure
Date released
10
March, 2020
4
October, 2019
November, 2019
Available data
3128
bam
2828
bigWig
1506
bed narrowPeak
1468
tsv
1163
fastq
1042
bigBed narrowPeak
320
bed broadPeak
314
tagAlign
285
bigBed broadPeak
269
bed bed3+
95
txt
36
bed bedMethyl
36
bigBed bedMethyl
16
bedpe bed3+
14
hic
12
bed bed3
8
csv
5
hdf5
4
bed bedgraph
4
tar
2
ibed
1
tagAlign bed3+
Organism
14
Homo sapiens
Biosample type
8
tissue
4
in vitro differentiated cells
2
primary cell
Organ
3
blood vessel
3
heart
3
vasculature
2
epithelium
2
musculature of body
2
vein
1
liver
1
pancreas
Project
14
AMP
Genome assembly (visualization)
14
hg19
Lab
14
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
4
inconsistent ontology term
1
audit script error
month_released!
November, 2019
BIOSAMPLE
ASSAY
14 results
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Hi-C
tissue
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
heart right ventricle
1
+ See 2 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
primary cell
endothelial cell of umbilical vein
2
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