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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ATAC-seq
2
pCHi-C
Assay category
12
DNA accessibility
Date released
10
February, 2023
2
February, 2021
2
March, 2020
Available data
3187
bam
2859
bigWig
1543
bed narrowPeak
1488
tsv
1163
fastq
1042
bigBed narrowPeak
320
bed broadPeak
314
tagAlign
285
bigBed broadPeak
269
bed bed3+
95
txt
36
bed bedMethyl
36
bigBed bedMethyl
18
bedpe bed3+
16
hic
12
bed bed3
8
csv
5
hdf5
4
bed bedgraph
4
tar
2
ibed
1
tagAlign bed3+
Organism
14
Homo sapiens
Biosample type
7
in vitro differentiated cells
5
tissue
1
cell line
1
primary cell
Organ
6
connective tissue
4
bone element
4
skeleton
1
brain
1
liver
Project
14
AMP
Genome assembly (visualization)
14
hg19
2
GRCh38
Lab
14
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
inconsistent replicate
BIOSAMPLE
ASSAY
14 results
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ATAC-seq
pCHi-C
in vitro differentiated cells
chondrocyte
5
cardiomyocytes (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
tissue
acetabular part of hip bone
1
brain
1
ilium
1
ischium
1
pubis
1
cell line
HepG2
1
primary cell
osteoblast
1
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