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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
12
ATAC-seq
5
single cell RNA-seq
4
total RNA-seq
1
MPRA
1
snATAC-seq
Assay category
13
DNA accessibility
9
Transcription
Date released
91
February, 2021
14
February, 2023
1
May, 2022
1
October, 2022
Available data
3187
bam
2859
bigWig
1543
bed narrowPeak
1488
tsv
1163
fastq
1042
bigBed narrowPeak
320
bed broadPeak
314
tagAlign
285
bigBed broadPeak
269
bed bed3+
95
txt
36
bed bedMethyl
36
bigBed bedMethyl
18
bedpe bed3+
16
hic
12
bed bed3
8
csv
5
hdf5
4
bed bedgraph
4
tar
2
ibed
1
tagAlign bed3+
Organism
106
Homo sapiens
Biosample type
99
tissue
5
in vitro differentiated cells
2
cell line
1
primary cell
Organ
92
bone element
8
skeleton
6
connective tissue
5
kidney
1
brain
1
liver
1
musculature of body
Project
107
AMP
Genome assembly (visualization)
13
hg19
2
GRCh38
Lab
107
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
84
inconsistent ontology term
6
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
107 results
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Clear Filters
RNA microarray
ATAC-seq
single cell RNA-seq
total RNA-seq
MPRA
snATAC-seq
tissue
bone element
84
kidney
5
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
+ See 3 more…
in vitro differentiated cells
chondrocyte
5
cell line
HepG2
1
MIN6
1
primary cell
osteoblast
1
See all biosamples
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