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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
44
single cell RNA-seq
9
DNase-seq
7
WGBS
6
total RNA-seq
1
FAIRE-seq
Assay category
70
DNA binding
50
Transcription
10
DNA accessibility
7
DNA methylation
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
670
February, 2021
411
August, 2017
406
November, 2017
314
October, 2019
296
May, 2020
218
June, 2019
168
July, 2018
164
May, 2021
151
August, 2021
120
May, 2019
108
July, 2019
103
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
49
April, 2018
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
22
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
6
November, 2020
4
August, 2018
3
June, 2018
2
May, 2022
1
August, 2022
1
May, 2023
1
October, 2022
Available data
136
bam
132
fastq
129
bigWig
73
bed narrowPeak
73
bigBed narrowPeak
49
tsv
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
137
Homo sapiens
Biosample type
61
cell line
44
primary cell
32
tissue
Organ
53
liver
46
pancreas
33
epithelium
15
blood
15
bodily fluid
9
spleen
3
connective tissue
2
brain
1
adipose tissue
Project
137
AMP
Genome assembly (visualization)
128
GRCh38
120
hg19
Lab
137
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
137 results
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ChIP-seq
single cell RNA-seq
DNase-seq
WGBS
total RNA-seq
FAIRE-seq
cell line
HepG2
45
1
GM12878
15
primary cell
pancreatic delta cell
7
pancreatic acinar cell
6
pancreatic ductal cell
6
pancreatic polypeptide-secreting cell
6
mesenchymal cell
5
+ See 5 more…
tissue
spleen
6
1
2
islet of Langerhans
6
liver
4
2
body of pancreas
2
2
pancreas
2
1
+ See 3 more…
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