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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
ChIP-seq
26
ATAC-seq
6
pCHi-C
2
Capture-C
2
Hi-C
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
Assay category
69
DNA binding
26
DNA accessibility
2
3D chromatin structure
Target of assay
63
control
5
transcription factor
2
RNA binding protein
1
broad histone mark
1
histone
1
histone modification
1
recombinant protein
Date released
47
November, 2017
16
May, 2021
13
February, 2021
10
October, 2019
4
March, 2020
4
November, 2018
4
November, 2019
3
January, 2019
2
August, 2021
1
December, 2018
1
February, 2023
1
May, 2020
1
October, 2022
Available data
582
bam
bigWig
427
fastq
390
bed narrowPeak
355
bigBed narrowPeak
110
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
1
bed bed3
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
1
hic
1
txt
Organism
105
Homo sapiens
Biosample type
714
tissue
136
primary cell
107
cell line
91
in vitro differentiated cells
5
stem cell
Organ
52
liver
30
pancreas
23
epithelium
10
artery
10
blood vessel
10
heart
10
vasculature
6
blood
6
bodily fluid
5
kidney
1
mammary gland
Project
107
AMP
Genome assembly (visualization)
12
hg19
10
GRCh38
Lab
107
AMP-T2D consortium
20
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
0
Stephen Parker, UMich
Audit category:
27
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
files.file_type!
bigWig
BIOSAMPLE
ASSAY
107 results
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ChIP-seq
ATAC-seq
pCHi-C
Capture-C
Hi-C
CRISPR genome editing followed by sgRNA sequencing
MPRA
cell line
HepG2
48
1
2
1
EndoC_BH1
2
17
2
1
1
smooth muscle cell of the coronary artery
2
8
Panc1
7
GM12878
6
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