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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
485
ChIP-seq
160
total RNA-seq
4
WGBS
3
ATAC-seq
3
DNase-seq
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
1
single cell RNA-seq
Assay category
485
DNA binding
164
Transcription
6
DNA accessibility
6
DNA methylation
3
3D chromatin structure
Target of assay
278
transcription factor
104
control
100
histone modification
99
histone
66
recombinant protein
58
narrow histone mark
41
broad histone mark
38
RNA binding protein
18
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
54
August, 2017
November, 2018
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
4
August, 2021
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
628
bam
536
bigWig
412
fastq
356
bed narrowPeak
307
bigBed narrowPeak
165
tsv
86
tagAlign
60
bed broadPeak
60
bigBed broadPeak
10
bed bed3+
3
tar
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
667
Homo sapiens
Biosample type
324
cell line
314
tissue
15
in vitro differentiated cells
14
primary cell
Organ
718
pancreas
678
connective tissue
667
liver
490
adipose tissue
366
epithelium
353
heart
284
brain
236
vasculature
230
blood vessel
163
kidney
158
bone element
141
artery
122
limb
96
musculature of body
61
eye
46
blood
46
bodily fluid
43
nerve
37
embryo
22
vein
18
ureter
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
667
AMP
Genome assembly (visualization)
541
hg19
479
GRCh38
Lab
667
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
10
missing controlled_by
Audit category:
22
inconsistent control read length
4
inconsistent control run_type
month_released!
November, 2018
BIOSAMPLE
ASSAY
667 results
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ChIP-seq
total RNA-seq
WGBS
ATAC-seq
DNase-seq
Hi-C
pCHi-C
small RNA-seq
RRBS
single cell RNA-seq
cell line
HepG2
315
5
1
1
2
tissue
liver
141
147
3
1
1
1
1
1
right lobe of liver
10
3
1
1
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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