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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
total RNA-seq
14
ATAC-seq
8
ChIP-seq
2
pCHi-C
Assay category
101
Transcription
14
DNA accessibility
8
DNA binding
Target of assay
5
transcription factor
3
control
Date released
324
November, 2017
127
August, 2017
126
May, 2021
125
February, 2021
103
May, 2020
73
September, 2018
72
October, 2019
62
November, 2018
55
June, 2019
52
August, 2021
48
July, 2018
46
December, 2017
43
April, 2018
39
February, 2018
31
July, 2019
28
December, 2018
26
February, 2023
24
March, 2020
23
January, 2019
21
November, 2019
7
December, 2019
6
January, 2018
6
November, 2020
5
May, 2019
5
September, 2017
4
August, 2018
3
June, 2018
2
October, 2018
1
October, 2022
Available data
120
bam
107
bigWig
101
tsv
15
bed narrowPeak
8
tagAlign
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
125
Homo sapiens
Biosample type
tissue
96
cell line
26
in vitro differentiated cells
3
primary cell
Organ
66
artery
66
blood vessel
66
heart
66
vasculature
26
epithelium
26
pancreas
11
connective tissue
2
liver
Project
125
AMP
Genome assembly (visualization)
122
hg19
116
GRCh38
Lab
125
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
44
inconsistent ontology term
1
inconsistent replicate
biosample_type!
tissue
BIOSAMPLE
ASSAY
125 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
primary cell
osteoblast
1
1
1
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