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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
pCHi-C
15
total RNA-seq
10
Hi-C
4
ATAC-seq
Assay category
15
Transcription
10
3D chromatin structure
4
DNA accessibility
DNA binding
Date released
662
February, 2021
246
May, 2020
187
June, 2019
168
July, 2018
153
May, 2021
126
August, 2021
115
August, 2017
108
July, 2019
103
February, 2023
72
October, 2019
61
March, 2020
49
April, 2018
48
November, 2019
41
September, 2018
25
February, 2020
18
November, 2018
15
February, 2018
10
December, 2019
8
January, 2018
7
October, 2017
6
November, 2020
5
January, 2019
5
September, 2017
4
August, 2018
3
June, 2018
2
May, 2022
2
October, 2018
1
August, 2022
1
December, 2018
1
May, 2023
1
October, 2022
Available data
45
tsv
17
bigWig
13
bam
12
bedpe bed3+
10
hic
2
ibed
Organism
61
Homo sapiens
Biosample type
38
tissue
10
cell line
8
in vitro differentiated cells
4
stem cell
1
primary cell
Organ
11
pancreas
7
heart
5
epithelium
5
musculature of body
4
blood vessel
4
vasculature
3
liver
2
brain
2
connective tissue
2
intestine
2
kidney
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
57
AMP
4
T1D
Genome assembly (visualization)
29
hg19
13
GRCh38
Lab
61
AMP-T2D consortium
Audit category:
16
inconsistent ontology term
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
61 results
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Clear Filters
pCHi-C
total RNA-seq
Hi-C
ATAC-seq
tissue
psoas muscle
1
2
2
islet of Langerhans
2
2
aorta
1
1
1
heart left ventricle
1
1
1
heart right ventricle
1
1
1
+ See 16 more…
cell line
EndoC_BH1
2
2
early embryonic cell
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
+ See 1 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
primary cell
endothelial cell of umbilical vein
1
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