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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
145
ChIP-seq
98
single cell RNA-seq
15
total RNA-seq
10
ATAC-seq
2
Capture-C
1
RNA microarray
Assay category
145
DNA binding
113
Transcription
10
DNA accessibility
Target of assay
109
histone
109
histone modification
66
broad histone mark
43
narrow histone mark
31
control
5
RNA binding protein
5
transcription factor
Date released
670
February, 2021
411
August, 2017
406
November, 2017
314
October, 2019
296
May, 2020
218
June, 2019
168
July, 2018
164
May, 2021
151
August, 2021
120
May, 2019
108
July, 2019
103
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
49
April, 2018
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
22
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
6
November, 2020
4
August, 2018
3
June, 2018
2
May, 2022
1
August, 2022
1
May, 2023
1
October, 2022
Available data
169
bam
128
bigWig
123
bed narrowPeak
113
tsv
97
bigBed narrowPeak
24
tagAlign
3
bed bed3+
Organism
270
Homo sapiens
Biosample type
214
tissue
38
in vitro differentiated cells
10
cell line
9
primary cell
Organ
113
heart
56
blood vessel
56
vasculature
28
brain
11
epithelium
8
embryo
7
artery
7
limb
7
musculature of body
5
kidney
4
liver
4
pancreas
1
adipose tissue
1
connective tissue
Project
271
AMP
Genome assembly (visualization)
137
GRCh38
137
hg19
Lab
271
AMP-T2D consortium
128
Katalin Susztak, Upenn
36
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
5
inconsistent ontology term
BIOSAMPLE
ASSAY
271 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
Capture-C
RNA microarray
tissue
right cardiac atrium
6
18
heart left ventricle
18
left cardiac atrium
18
aorta
13
4
heart right ventricle
17
+ See 18 more…
in vitro differentiated cells
neural progenitor cell
21
7
10
cell line
H1-hESC
8
EndoC_BH1
2
primary cell
kidney epithelial cell
5
hepatocyte
4
See all biosamples
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