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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
pCHi-C
18
ChIP-seq
15
total RNA-seq
11
ATAC-seq
10
Hi-C
Assay category
18
DNA binding
15
Transcription
11
DNA accessibility
10
3D chromatin structure
Target of assay
15
histone
15
histone modification
10
broad histone mark
5
narrow histone mark
3
control
Date released
670
February, 2021
411
August, 2017
406
November, 2017
314
October, 2019
296
May, 2020
218
June, 2019
168
July, 2018
164
May, 2021
151
August, 2021
120
May, 2019
108
July, 2019
103
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
49
April, 2018
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
22
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
6
November, 2020
4
August, 2018
3
June, 2018
2
May, 2022
1
August, 2022
1
May, 2023
1
October, 2022
Available data
45
tsv
33
bigWig
31
bam
16
fastq
15
bed narrowPeak
14
tagAlign
12
bedpe bed3+
10
hic
6
bigBed narrowPeak
3
bed broadPeak
2
ibed
Organism
86
Homo sapiens
Biosample type
62
tissue
11
cell line
8
in vitro differentiated cells
4
stem cell
1
primary cell
Organ
18
brain
18
pancreas
7
heart
6
epithelium
5
musculature of body
4
blood vessel
4
vasculature
3
connective tissue
3
liver
2
adipose tissue
2
intestine
2
kidney
2
spleen
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
79
AMP
7
T1D
Genome assembly (visualization)
44
hg19
29
GRCh38
Lab
86
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
17
inconsistent ontology term
Audit category:
4
missing controlled_by
BIOSAMPLE
ASSAY
86 results
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Clear Filters
pCHi-C
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
tissue
brain
15
islet of Langerhans
2
2
2
psoas muscle
1
2
2
body of pancreas
4
aorta
1
1
1
+ See 20 more…
cell line
EndoC_BH1
1
2
2
early embryonic cell
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
+ See 1 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
primary cell
endothelial cell of umbilical vein
1
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