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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ATAC-seq
28
ChIP-seq
20
total RNA-seq
2
Hi-C
Assay category
33
DNA accessibility
28
DNA binding
20
Transcription
2
3D chromatin structure
Target of assay
22
histone
22
histone modification
16
broad histone mark
6
narrow histone mark
5
control
1
RNA binding protein
1
transcription factor
Date released
670
February, 2021
411
August, 2017
406
November, 2017
314
October, 2019
296
May, 2020
218
June, 2019
168
July, 2018
164
May, 2021
151
August, 2021
120
May, 2019
108
July, 2019
103
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
49
April, 2018
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
22
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
6
November, 2020
4
August, 2018
3
June, 2018
2
May, 2022
1
August, 2022
1
May, 2023
1
October, 2022
Available data
74
bam
49
bed narrowPeak
44
bigWig
20
tsv
16
fastq
14
tagAlign
6
bigBed narrowPeak
3
bed broadPeak
2
bedpe bed3+
2
hic
Organism
83
Homo sapiens
Biosample type
62
tissue
16
cell line
5
in vitro differentiated cells
Organ
59
pancreas
16
brain
16
epithelium
2
adipose tissue
2
connective tissue
1
spleen
Project
83
AMP
Genome assembly (visualization)
71
hg19
70
GRCh38
Lab
83
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
22
inconsistent ontology term
Audit category:
4
missing controlled_by
BIOSAMPLE
ASSAY
83 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
Hi-C
tissue
islet of Langerhans
19
19
1
brain
15
body of pancreas
4
adipose tissue(adipose white tissue)
1
cerebellum (Hemisphere)
1
+ See 2 more…
cell line
EndoC_BH1
1
13
1
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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