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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
5
Hi-C
5
total RNA-seq
4
single cell RNA-seq
2
WGBS
1
pCHi-C
Assay category
65
DNA binding
9
Transcription
DNA accessibility
5
3D chromatin structure
2
DNA methylation
Target of assay
50
histone
50
histone modification
31
broad histone mark
19
narrow histone mark
12
control
3
RNA binding protein
3
transcription factor
Date released
45
May, 2019
18
October, 2019
7
July, 2019
4
August, 2021
4
March, 2020
3
November, 2017
1
February, 2020
Available data
71
bam
58
bigWig
48
bed narrowPeak
48
bigBed narrowPeak
10
tsv
4
bed broadPeak
4
bigBed broadPeak
3
fastq
3
hic
2
bed bed3+
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
Organism
82
Homo sapiens
Biosample type
58
tissue
24
primary cell
Organ
711
liver
647
connective tissue
645
pancreas
483
adipose tissue
292
epithelium
276
heart
249
brain
178
vasculature
174
blood vessel
146
bone element
artery
81
kidney
78
limb
61
musculature of body
60
blood
60
bodily fluid
40
nerve
37
embryo
29
eye
23
spleen
19
vein
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
82
AMP
Genome assembly (visualization)
60
hg19
53
GRCh38
Lab
82
AMP-T2D consortium
Audit category:
1
audit script error
organ_slims!
artery
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
82 results
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ChIP-seq
Hi-C
total RNA-seq
single cell RNA-seq
WGBS
pCHi-C
tissue
aorta
13
1
1
4
2
1
ascending aorta
16
2
thoracic aorta
16
2
primary cell
endothelial cell of umbilical vein
17
2
brain microvascular endothelial cell
3
1
endothelial cell of hepatic sinusoid
1
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