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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
5
DNase-seq
5
Hi-C
5
total RNA-seq
4
single cell RNA-seq
2
WGBS
1
ATAC-seq
FAIRE-seq
1
pCHi-C
Assay category
65
DNA binding
9
Transcription
6
DNA accessibility
5
3D chromatin structure
2
DNA methylation
Target of assay
50
histone
50
histone modification
31
broad histone mark
19
narrow histone mark
12
control
3
RNA binding protein
3
transcription factor
Date released
45
May, 2019
20
October, 2019
8
July, 2019
4
August, 2021
4
March, 2020
3
June, 2019
3
November, 2017
1
February, 2020
Available data
77
bam
64
bigWig
54
bed narrowPeak
53
bigBed narrowPeak
10
tsv
9
bed broadPeak
9
bigBed broadPeak
7
bed bed3+
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
Organism
88
Homo sapiens
Biosample type
60
tissue
28
primary cell
Organ
723
pancreas
720
liver
679
connective tissue
491
adipose tissue
365
epithelium
353
heart
285
brain
235
vasculature
229
blood vessel
162
kidney
158
bone element
artery
122
limb
96
musculature of body
61
blood
61
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
21
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
88
AMP
Genome assembly (visualization)
65
hg19
59
GRCh38
Lab
88
AMP-T2D consortium
Audit category:
1
audit script error
organ_slims!
artery
assay_title!
FAIRE-seq
BIOSAMPLE
ASSAY
88 results
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Clear Filters
ChIP-seq
DNase-seq
Hi-C
total RNA-seq
single cell RNA-seq
WGBS
ATAC-seq
pCHi-C
tissue
aorta
13
1
1
4
2
1
ascending aorta
16
1
2
thoracic aorta
16
2
1
primary cell
endothelial cell of umbilical vein
17
2
2
brain microvascular endothelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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