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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
6
total RNA-seq
5
DNase-seq
5
Hi-C
4
single cell RNA-seq
2
WGBS
1
ATAC-seq
1
FAIRE-seq
1
pCHi-C
Assay category
65
DNA binding
10
Transcription
7
DNA accessibility
5
3D chromatin structure
2
DNA methylation
Target of assay
50
histone
50
histone modification
31
broad histone mark
19
narrow histone mark
12
control
3
RNA binding protein
3
transcription factor
Date released
45
May, 2019
21
October, 2019
8
July, 2019
4
August, 2021
4
March, 2020
3
June, 2019
3
November, 2017
2
February, 2020
Available data
78
bam
65
bigWig
55
bed narrowPeak
54
bigBed narrowPeak
11
tsv
9
bed broadPeak
9
bigBed broadPeak
7
bed bed3+
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
90
Homo sapiens
Biosample type
61
tissue
29
primary cell
Organ
725
pancreas
720
liver
679
connective tissue
491
adipose tissue
366
epithelium
353
heart
286
brain
236
vasculature
230
blood vessel
163
kidney
158
bone element
artery
122
limb
96
musculature of body
61
blood
61
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
90
AMP
Genome assembly (visualization)
66
hg19
59
GRCh38
Lab
90
AMP-T2D consortium
Audit category:
1
audit script error
organ_slims!
artery
BIOSAMPLE
ASSAY
90 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
Hi-C
single cell RNA-seq
WGBS
ATAC-seq
FAIRE-seq
pCHi-C
tissue
aorta
13
1
1
4
2
1
ascending aorta
16
2
1
thoracic aorta
16
2
1
C1 segment of cervical spinal cord
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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