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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
Hi-C
3
pCHi-C
Assay category
13
3D chromatin structure
Date released
11
March, 2020
3
October, 2019
1
August, 2018
1
November, 2019
Available data
2870
bam
2568
bigWig
1392
bed narrowPeak
1338
tsv
975
fastq
966
bigBed narrowPeak
307
tagAlign
298
bed broadPeak
263
bigBed broadPeak
248
bed bed3+
txt
30
bed bedMethyl
30
bigBed bedMethyl
16
bedpe bed3+
13
hic
12
bed bed3
8
csv
4
bed bedgraph
3
hdf5
3
tar
2
ibed
1
tagAlign bed3+
Organism
16
Homo sapiens
Biosample type
9
tissue
7
in vitro differentiated cells
Organ
3
heart
3
pancreas
2
blood vessel
epithelium
2
musculature of body
2
vasculature
1
adipose tissue
1
connective tissue
1
liver
1
vein
Project
16
AMP
Genome assembly (visualization)
15
hg19
Lab
16
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
6
inconsistent ontology term
organ_slims!
epithelium
files.file_type!
txt
BIOSAMPLE
ASSAY
16 results
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Hi-C
pCHi-C
tissue
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
heart right ventricle
1
+ See 3 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
white fat cell
1
See all biosamples
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