Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
139
ChIP-seq
129
total RNA-seq
32
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
1
DNase-seq
Assay category
139
DNA binding
129
Transcription
33
DNA accessibility
4
3D chromatin structure
Target of assay
77
histone
77
histone modification
39
broad histone mark
37
narrow histone mark
34
transcription factor
28
control
4
RNA binding protein
2
chromatin remodeller
Date released
80
May, 2021
68
August, 2017
39
February, 2018
38
August, 2021
26
February, 2021
24
December, 2017
13
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
December, 2019
1
August, 2018
Available data
267
bam
229
bigWig
127
tsv
122
fastq
110
bed narrowPeak
37
tagAlign
23
bed bed3+
7
bedpe bed3+
5
bed bed3
4
bed bedgraph
4
hic
3
bigBed narrowPeak
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
314
Homo sapiens
Biosample type
2408
tissue
542
cell line
314
in vitro differentiated cells
270
primary cell
8
stem cell
Organ
93
connective tissue
29
embryo
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
314
AMP
Genome assembly (visualization)
265
hg19
245
GRCh38
4
hg18
Lab
314
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
107
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
16
inconsistent control read length
organ_slims!
epithelium
month_released!
December, 2019
BIOSAMPLE
ASSAY
314 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
DNase-seq
in vitro differentiated cells
adipocyte
67
5
7
1
cardiomyocytes
3
59
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
cardiac precursors (cardiac muscle cell)
19
1
1
+ See 23 more…
See all biosamples
Download