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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
ChIP-seq
6
single cell RNA-seq
3
snDrop-seq
2
pCHi-C
1
DNase-seq
1
RNA microarray
Assay category
10
DNA binding
6
Transcription
1
DNA accessibility
Target of assay
9
control
1
RNA binding protein
1
transcription factor
Date released
8
February, 2021
5
April, 2019
5
October, 2019
2
December, 2019
2
March, 2020
1
June, 2019
Available data
11
bam
11
tsv
5
csv
5
txt
1
bed bed3+
1
bed broadPeak
1
bed narrowPeak
1
bigBed broadPeak
1
bigBed narrowPeak
1
bigWig
Organism
23
Homo sapiens
Biosample type
18
tissue
5
cell line
Organ
165
heart
130
liver
122
brain
94
connective tissue
92
pancreas
88
bone element
71
blood vessel
71
vasculature
65
adipose tissue
epithelium
48
artery
35
kidney
27
eye
26
limb
23
musculature of body
12
nerve
11
spleen
8
embryo
6
blood
6
bodily fluid
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
23
AMP
Genome assembly (visualization)
hg19
100
GRCh38
Lab
141
Katalin Susztak, Upenn
47
KPMP
23
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
6
audit script error
5
inconsistent ontology term
organ_slims!
epithelium
assembly!
hg19
BIOSAMPLE
ASSAY
23 results
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ChIP-seq
single cell RNA-seq
snDrop-seq
pCHi-C
DNase-seq
RNA microarray
tissue
kidney
7
6
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
kidney interstitium
1
+ See 1 more…
cell line
RCC 7860 vector
1
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 VHL
1
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