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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
ChIP-seq
70
single cell RNA-seq
40
total RNA-seq
23
ATAC-seq
18
DNase-seq
6
RRBS
4
Hi-C
1
FAIRE-seq
Assay category
110
Transcription
92
DNA binding
42
DNA accessibility
6
DNA methylation
4
3D chromatin structure
Target of assay
66
histone
66
histone modification
35
narrow histone mark
31
broad histone mark
21
control
5
RNA binding protein
5
transcription factor
Date released
61
September, 2018
33
April, 2018
33
July, 2018
33
October, 2019
29
August, 2017
20
June, 2019
13
July, 2019
6
November, 2017
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
2
October, 2018
1
June, 2018
1
March, 2020
Available data
242
bam
221
bigWig
169
fastq
110
tsv
106
bed narrowPeak
61
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
4
tagAlign
2
hdf5
2
hic
1
bedpe bed3+
1
tar
Organism
254
Homo sapiens
Biosample type
254
primary cell
73
cell line
24
in vitro differentiated cells
15
tissue
Organ
254
epithelium
194
pancreas
38
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
254
AMP
Genome assembly (visualization)
224
hg19
215
GRCh38
Lab
254
AMP-T2D consortium
152
Klaus Kaestner, Upenn
Audit category:
10
inconsistent ontology term
1
audit script error
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
BIOSAMPLE
ASSAY
254 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
RRBS
Hi-C
FAIRE-seq
primary cell
pancreatic beta cell
13
12
10
7
pancreatic alpha cell
13
12
10
6
pancreatic ductal cell
13
10
4
4
pancreatic acinar cell
8
12
4
5
endothelial cell of umbilical vein
17
2
2
1
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