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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
534
ChIP-seq
160
total RNA-seq
5
WGBS
4
DNase-seq
3
ATAC-seq
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
1
single cell RNA-seq
Assay category
534
DNA binding
164
Transcription
7
DNA accessibility
7
DNA methylation
3
3D chromatin structure
Target of assay
327
transcription factor
104
control
100
histone modification
99
histone
82
recombinant protein
58
narrow histone mark
57
RNA binding protein
41
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
54
August, 2017
53
November, 2018
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
4
August, 2021
3
February, 2021
3
March, 2020
June, 2019
1
December, 2018
1
February, 2020
Available data
679
bam
586
bigWig
465
fastq
405
bed narrowPeak
356
bigBed narrowPeak
165
tsv
86
tagAlign
61
bed broadPeak
61
bigBed broadPeak
11
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
718
Homo sapiens
Biosample type
370
cell line
321
tissue
15
in vitro differentiated cells
12
primary cell
Organ
721
pancreas
718
liver
661
connective tissue
490
adipose tissue
346
epithelium
318
heart
256
brain
229
vasculature
225
blood vessel
158
bone element
139
artery
90
limb
82
kidney
61
blood
61
bodily fluid
54
eye
53
musculature of body
43
nerve
37
embryo
25
spleen
22
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
718
AMP
Genome assembly (visualization)
588
hg19
529
GRCh38
Lab
718
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
month_released!
June, 2019
BIOSAMPLE
ASSAY
718 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
DNase-seq
ATAC-seq
Hi-C
pCHi-C
small RNA-seq
RRBS
single cell RNA-seq
cell line
HepG2
360
5
1
1
1
2
tissue
liver
145
147
3
2
1
1
1
1
1
right lobe of liver
10
3
1
2
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
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