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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
total RNA-seq
70
single cell RNA-seq
Assay category
148
Transcription
133
DNA binding
74
DNA accessibility
6
DNA methylation
5
3D chromatin structure
Date released
33
April, 2018
33
July, 2018
26
February, 2021
26
September, 2018
6
May, 2021
5
December, 2019
5
July, 2019
3
August, 2018
3
October, 2019
2
February, 2023
2
March, 2020
2
October, 2018
1
June, 2018
1
November, 2019
Available data
148
tsv
146
bam
146
bigWig
94
fastq
Organism
148
Homo sapiens
Biosample type
110
primary cell
34
cell line
2
in vitro differentiated cells
2
tissue
Organ
481
connective tissue
413
pancreas
401
adipose tissue
166
heart
164
liver
148
epithelium
67
blood vessel
67
vasculature
62
bone element
58
artery
24
brain
19
eye
18
kidney
14
embryo
9
musculature of body
7
limb
5
nerve
4
skeleton
1
pericardium
1
spinal cord
0
ovary
Project
146
AMP
2
T1D
Genome assembly (visualization)
146
GRCh38
146
hg19
Lab
148
AMP-T2D consortium
53
Klaus Kaestner, Upenn
Audit category:
35
inconsistent ontology term
BIOSAMPLE
ASSAY
148 results
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total RNA-seq
single cell RNA-seq
primary cell
pancreatic alpha cell
10
12
pancreatic beta cell
10
12
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
pancreatic delta cell
11
+ See 11 more…
cell line
EndoC_BH1
33
glomerular visceral epithelial cell
1
in vitro differentiated cells
endothelial cell
1
intermediate endothelial cell
1
tissue
pigmented layer of retina
2
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