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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
31
ChIP-seq
7
total RNA-seq
6
Hi-C
6
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
34
DNA accessibility
31
DNA binding
10
Transcription
7
DNA methylation
6
3D chromatin structure
Target of assay
26
histone
26
histone modification
16
broad histone mark
10
narrow histone mark
5
control
Date released
34
June, 2019
26
August, 2017
12
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
61
bigWig
52
bed narrowPeak
49
bam
45
bed broadPeak
39
bigBed narrowPeak
33
bed bed3+
32
bigBed broadPeak
15
tagAlign
10
tsv
5
bed bedMethyl
5
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
89
Homo sapiens
Biosample type
82
tissue
7
primary cell
Organ
719
liver
660
connective tissue
650
pancreas
490
adipose tissue
347
heart
283
brain
281
epithelium
235
vasculature
230
blood vessel
141
artery
140
kidney
121
limb
87
musculature of body
74
bone element
61
blood
61
bodily fluid
61
eye
43
nerve
31
embryo
25
spleen
22
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
thymus
Project
89
AMP
Genome assembly (visualization)
67
hg19
46
GRCh38
Lab
89
AMP-T2D consortium
Audit category:
inconsistent ontology term
1
audit script error
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
89 results
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DNase-seq
ChIP-seq
total RNA-seq
Hi-C
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
1
muscle of leg
12
7
1
muscle of arm
17
gastrocnemius medialis
1
4
psoas muscle
2
2
1
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primary cell
skeletal muscle cell
1
2
1
skeletal muscle satellite cell
1
1
pericardium fibroblast
1
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