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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
449
ChIP-seq
104
total RNA-seq
6
pCHi-C
3
Hi-C
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
Assay category
449
DNA binding
104
Transcription
DNA accessibility
3
3D chromatin structure
1
DNA methylation
Target of assay
350
transcription factor
89
recombinant protein
76
control
64
RNA binding protein
35
histone
35
histone modification
30
chromatin remodeller
18
broad histone mark
narrow histone mark
2
other context
2
other post-translational modification
Date released
308
November, 2017
87
February, 2021
61
November, 2018
28
December, 2018
25
October, 2019
22
January, 2019
11
November, 2019
10
August, 2021
8
March, 2020
4
May, 2021
1
February, 2023
1
May, 2020
1
October, 2022
Available data
553
bam
486
bigWig
419
fastq
362
bed narrowPeak
343
bigBed narrowPeak
109
tsv
52
bed broadPeak
52
bigBed broadPeak
15
tagAlign
3
tar
2
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
1
hic
1
txt
Organism
565
Homo sapiens
Biosample type
1801
tissue
567
cell line
276
primary cell
262
in vitro differentiated cells
7
stem cell
Organ
362
liver
59
blood
59
bodily fluid
58
artery
58
blood vessel
58
heart
58
vasculature
57
pancreas
47
epithelium
16
kidney
8
embryo
1
mammary gland
Project
565
AMP
2
T1D
Genome assembly (visualization)
483
hg19
436
GRCh38
Lab
567
AMP-T2D consortium
32
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
60
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
21
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
target.investigated_as!
narrow histone mark
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
567 results
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ChIP-seq
total RNA-seq
pCHi-C
Hi-C
Capture-C
CRISPR genome editing followed by sgRNA sequencing
MPRA
WGBS
cell line
HepG2
353
5
2
1
1
GM12878
59
smooth muscle cell of the coronary artery
6
52
EndoC_BH1
9
33
1
2
1
Panc1
10
1
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