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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
total RNA-seq
116
ChIP-seq
32
ATAC-seq
4
GRO-seq
4
Hi-C
4
pCHi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
133
Transcription
116
DNA binding
33
DNA accessibility
4
3D chromatin structure
Target of assay
92
histone
92
histone modification
46
broad histone mark
narrow histone mark
37
transcription factor
32
control
6
RNA binding protein
3
chromatin remodeller
Date released
84
May, 2021
52
August, 2017
31
August, 2021
31
February, 2018
30
December, 2017
26
February, 2021
13
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
Available data
250
bam
209
bigWig
131
tsv
107
fastq
88
bed narrowPeak
28
tagAlign
19
bed bed3+
12
bigBed narrowPeak
6
bedpe bed3+
5
bed bed3
4
bed bedgraph
4
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
294
Homo sapiens
Biosample type
1640
tissue
598
cell line
457
primary cell
294
in vitro differentiated cells
7
stem cell
Organ
77
connective tissue
21
embryo
16
epithelium
10
liver
2
pancreas
adipose tissue
1
heart
Project
294
AMP
Genome assembly (visualization)
245
hg19
225
GRCh38
4
hg18
Lab
294
AMP-T2D consortium
37
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
112
inconsistent ontology term
2
audit script error
Audit category:
5
missing controlled_by
Audit category:
15
inconsistent control read length
target.investigated_as!
narrow histone mark
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
294 results
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total RNA-seq
ChIP-seq
ATAC-seq
GRO-seq
Hi-C
pCHi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
5
51
7
1
cardiomyocytes
59
3
neural progenitor cell
7
14
10
cardiac precursors (cardiac muscle cell)
19
1
1
pancreatic endoderm
4
12
1
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