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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
61
ChIP-seq
6
WGBS
5
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
61
DNA binding
7
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
45
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
October, 2017
1
October, 2019
Available data
440
bam
423
bigWig
401
tsv
43
fastq
10
bed narrowPeak
9
bigBed narrowPeak
6
bed bed3+
5
tagAlign
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
477
Homo sapiens
Biosample type
475
tissue
2
primary cell
1
in vitro differentiated cells
Organ
661
liver
631
connective tissue
583
pancreas
478
adipose tissue
324
heart
242
epithelium
209
vasculature
205
blood vessel
168
brain
135
artery
127
kidney
106
limb
77
musculature of body
74
bone element
60
blood
60
bodily fluid
58
eye
35
nerve
25
embryo
23
spleen
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
thymus
Project
478
AMP
Genome assembly (visualization)
423
hg19
422
GRCh38
Lab
478
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
12
missing controlled_by
target.investigated_as!
narrow histone mark
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
478 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
1
3
3
1
subcutaneous abdominal adipose tissue
25
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
2
white adipose tissue
12
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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