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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ChIP-seq
12
total RNA-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
61
DNA binding
15
Transcription
8
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
narrow histone mark
5
RNA binding protein
Date released
February, 2021
45
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
55
bam
43
fastq
37
bigWig
15
tsv
11
bed narrowPeak
9
bigBed narrowPeak
6
bed bed3+
5
tagAlign
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
92
Homo sapiens
Biosample type
90
tissue
2
primary cell
1
in vitro differentiated cells
Organ
659
liver
626
pancreas
291
epithelium
262
heart
191
connective tissue
169
brain
144
vasculature
140
kidney
139
blood vessel
101
limb
93
adipose tissue
83
musculature of body
69
artery
60
blood
60
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
18
ureter
16
vein
8
bone element
8
skeleton
2
intestine
2
pericardium
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
93
AMP
Genome assembly (visualization)
38
hg19
37
GRCh38
Lab
93
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
target.investigated_as!
narrow histone mark
month_released!
February, 2021
BIOSAMPLE
ASSAY
93 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue
25
3
omental fat pad
11
5
1
1
2
subcutaneous adipose tissue
12
5
1
1
1
white adipose tissue
12
adipose tissue
1
1
3
3
1
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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