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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
19
total RNA-seq
5
pCHi-C
4
DNase-seq
2
ChIP-seq
1
RRBS
Assay category
32
DNA accessibility
19
Transcription
2
DNA binding
1
DNA methylation
Target of assay
3
histone
3
histone modification
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
31
February, 2023
19
October, 2019
6
June, 2019
1
February, 2020
1
July, 2019
1
March, 2020
Available data
32
bed narrowPeak
6
bam
6
tsv
5
bigBed narrowPeak
5
bigWig
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
59
Homo sapiens
Biosample type
54
tissue
4
primary cell
1
cell line
Organ
662
liver
652
pancreas
646
connective tissue
479
adipose tissue
328
heart
317
epithelium
210
vasculature
205
blood vessel
169
brain
158
bone element
148
kidney
135
artery
107
limb
83
musculature of body
60
blood
60
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
59
AMP
Genome assembly (visualization)
33
hg19
5
GRCh38
Lab
59
AMP-T2D consortium
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
59 results
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ATAC-seq
total RNA-seq
pCHi-C
DNase-seq
ChIP-seq
RRBS
tissue
retina
15
3
3
islet of Langerhans
1
14
4
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
1
2
1
cell line
MCF-7
1
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