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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
207
ChIP-seq
160
total RNA-seq
6
DNase-seq
5
WGBS
3
ATAC-seq
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
1
single cell RNA-seq
Assay category
207
DNA binding
164
Transcription
9
DNA accessibility
7
DNA methylation
3
3D chromatin structure
Target of assay
transcription factor
104
control
100
histone modification
99
histone
82
recombinant protein
58
narrow histone mark
57
RNA binding protein
41
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
194
May, 2020
74
November, 2017
50
August, 2017
30
December, 2017
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
4
August, 2021
4
November, 2018
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
355
bam
266
bigWig
165
tsv
138
fastq
89
bed narrowPeak
86
tagAlign
44
bigBed narrowPeak
19
bed broadPeak
19
bigBed broadPeak
11
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
393
Homo sapiens
Biosample type
282
tissue
84
cell line
14
primary cell
13
in vitro differentiated cells
Organ
706
pancreas
639
connective tissue
474
adipose tissue
393
liver
357
epithelium
341
heart
283
brain
227
vasculature
222
blood vessel
158
bone element
153
kidney
136
artery
122
limb
96
musculature of body
60
eye
43
nerve
34
embryo
22
vein
19
spleen
18
ureter
16
skeleton
10
blood
10
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
393
AMP
Genome assembly (visualization)
272
hg19
245
GRCh38
Lab
393
AMP-T2D consortium
40
Karen Mohlke, UNC
20
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
Audit category:
12
inconsistent control read length
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
393 results
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ChIP-seq
total RNA-seq
DNase-seq
WGBS
ATAC-seq
Hi-C
pCHi-C
small RNA-seq
RRBS
single cell RNA-seq
tissue
liver
108
147
2
3
1
1
1
1
1
right lobe of liver
8
3
2
1
1
2
cell line
HepG2
74
5
1
1
1
2
primary cell
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
13
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