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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ChIP-seq
Assay category
27
DNA binding
Target of assay
700
histone modification
699
histone
419
transcription factor
364
narrow histone mark
335
broad histone mark
294
control
94
RNA binding protein
88
recombinant protein
27
chromatin remodeller
5
other context
5
other post-translational modification
Date released
11
November, 2017
6
January, 2019
5
November, 2018
2
December, 2017
2
December, 2018
1
August, 2017
Available data
27
bam
27
bed narrowPeak
27
bigBed narrowPeak
27
bigWig
27
fastq
5
bed broadPeak
5
bigBed broadPeak
Organism
27
Homo sapiens
Biosample type
24
cell line
in vitro differentiated cells
2
tissue
1
primary cell
Organ
16
liver
10
blood
10
bodily fluid
Project
27
AMP
Genome assembly (visualization)
27
GRCh38
27
hg19
Lab
27
AMP-T2D consortium
Audit category:
3
inconsistent control
Audit category:
missing controlled_by
Audit category:
6
inconsistent control read length
2
inconsistent control run_type
biosample_type!
in vitro differentiated cells
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
27 results
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ChIP-seq
cell line
HepG2
14
GM12878
10
tissue
liver
2
primary cell
skeletal muscle myoblast
1
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