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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
9
total RNA-seq
5
STARR-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
18
DNA binding
13
Transcription
1
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
34
August, 2021
4
March, 2023
Available data
14
bed narrowPeak
14
bigWig
9
tsv
1
bedpe bed3+
1
hic
1
vcf
Organism
34
Homo sapiens
Biosample type
36
cell line
tissue
2
stem cell
Organ
31
liver
2
kidney
Project
34
AMP
4
community
Genome assembly (visualization)
15
hg19
Lab
1487
AMP-T2D consortium
324
Klaus Kaestner, Upenn
291
Kyle Gaulton, UCSD
34
Bing Ren, UCSD
7
Struan F.A. Grant, CHOP
6
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
1
ITG
Audit category:
1
inconsistent ontology term
biosample_type!
tissue
BIOSAMPLE
ASSAY
38 results
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ChIP-seq
total RNA-seq
STARR-seq
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG2
18
9
2
1
1
EndoC-BH1
1
1
HEK293T
2
Synthesized DNA
1
stem cell
SB Ad3.1
1
1
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