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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ATAC-seq
20
total RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
24
Transcription
21
DNA accessibility
Date released
40
May, 2022
4
March, 2023
1
October, 2017
Available data
21
bigWig
20
bed narrowPeak
1
bed broadPeak
1
fastq
Organism
41
Homo sapiens
Biosample type
41
tissue
2
cell line
2
stem cell
Organ
40
liver
1
pancreas
Project
41
AMP
4
community
Genome assembly (visualization)
21
hg19
1
GRCh38
Lab
3912
AMP-T2D consortium
343
Kyle Gaulton, UCSD
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
BIOSAMPLE
ASSAY
45 results
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ATAC-seq
total RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
tissue
liver
20
20
islet of Langerhans
1
cell line
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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