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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
total RNA-seq
18
ChIP-seq
11
single cell RNA-seq
6
snATAC-seq
5
STARR-seq
4
Hi-C
1
whole genome sequencing assay
Assay category
82
DNA accessibility
18
DNA binding
11
Transcription
4
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
105
August, 2021
14
May, 2023
2
March, 2019
Available data
78
bed narrowPeak
64
xls
14
bigWig
8
txt
3
hic
2
bedpe bed3+
1
bedpe
1
vcf
Organism
121
Homo sapiens
Biosample type
96
tissue
25
cell line
Organ
95
kidney
22
liver
3
pancreas
Project
121
AMP
Genome assembly (visualization)
76
GRCh38
18
hg19
Lab
2665
AMP-T2D consortium
232
Klaus Kaestner, Upenn
228
Kyle Gaulton, UCSD
93
Katalin Susztak, Upenn
47
KPMP
28
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
121 results
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Clear Filters
ATAC-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
STARR-seq
Hi-C
whole genome sequencing assay
tissue
kidney
75
11
6
1
islet of Langerhans
1
2
cell line
HepG2
18
2
1
1
HEK293T
2
Synthesized DNA
1
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