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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
ChIP-seq
total RNA-seq
5
STARR-seq
3
Hi-C
1
ATAC-seq
1
whole genome sequencing assay
Assay category
16
DNA binding
3
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
24
August, 2021
2
March, 2019
Available data
12
bed narrowPeak
12
bigWig
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
26
Homo sapiens
Biosample type
23
cell line
3
tissue
Organ
20
liver
3
pancreas
2
kidney
Project
26
AMP
Genome assembly (visualization)
15
hg19
1
GRCh38
Lab
2228
AMP-T2D consortium
232
Klaus Kaestner, Upenn
168
Kyle Gaulton, UCSD
93
Katalin Susztak, Upenn
47
KPMP
26
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_title!
total RNA-seq
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
26 results
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ChIP-seq
STARR-seq
Hi-C
ATAC-seq
whole genome sequencing assay
cell line
HepG2
16
2
1
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
2
1
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