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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
total RNA-seq
5
STARR-seq
1
Hi-C
1
whole genome sequencing assay
Assay category
10
Transcription
DNA binding
1
3D chromatin structure
1
DNA sequencing
Date released
17
August, 2021
Available data
10
tsv
1
bedpe bed3+
1
vcf
Organism
17
Homo sapiens
Biosample type
15
cell line
2
tissue
Organ
12
liver
2
kidney
2
pancreas
Project
17
AMP
Genome assembly (visualization)
hg19
1
GRCh38
Lab
502
AMP-T2D consortium
321
Klaus Kaestner, Upenn
141
Katalin Susztak, Upenn
68
Kyle Gaulton, UCSD
47
KPMP
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
17
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
1
ITG
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
1
inconsistent ontology term
assembly!
hg19
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
17 results
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total RNA-seq
STARR-seq
Hi-C
whole genome sequencing assay
cell line
HepG2
9
2
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
1
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