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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
total RNA-seq
5
STARR-seq
4
ChIP-seq
1
Hi-C
1
whole genome sequencing assay
Assay category
10
Transcription
4
DNA binding
1
3D chromatin structure
1
DNA sequencing
Target of assay
4
control
Date released
21
August, 2021
Available data
10
tsv
1
bedpe bed3+
1
vcf
Organism
21
Homo sapiens
Biosample type
19
cell line
2
tissue
Organ
16
liver
2
kidney
2
pancreas
Project
21
AMP
Genome assembly (visualization)
hg19
1
GRCh38
Lab
987
AMP-T2D consortium
321
Klaus Kaestner, Upenn
Katalin Susztak, Upenn
105
Kyle Gaulton, UCSD
47
KPMP
40
Patrick T. Ellinor, Broad
21
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
1
ITG
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
1
inconsistent ontology term
assembly!
hg19
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
21 results
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total RNA-seq
STARR-seq
ChIP-seq
Hi-C
whole genome sequencing assay
cell line
HepG2
9
2
4
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
1
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