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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
59
total RNA-seq
11
single cell RNA-seq
6
snATAC-seq
5
STARR-seq
4
ChIP-seq
1
Hi-C
1
whole genome sequencing assay
Assay category
81
DNA accessibility
70
Transcription
4
DNA binding
1
3D chromatin structure
1
DNA sequencing
Target of assay
4
control
Date released
148
August, 2021
14
May, 2023
Available data
64
bed narrowPeak
64
xls
57
txt
10
tsv
1
bedpe bed3+
1
vcf
Organism
162
Homo sapiens
Biosample type
143
tissue
19
cell line
Organ
143
kidney
16
liver
2
pancreas
Project
162
AMP
Genome assembly (visualization)
76
GRCh38
hg19
Lab
987
AMP-T2D consortium
321
Klaus Kaestner, Upenn
141
Katalin Susztak, Upenn
105
Kyle Gaulton, UCSD
47
KPMP
40
Patrick T. Ellinor, Broad
21
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
1
ITG
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
1
inconsistent ontology term
assembly!
hg19
BIOSAMPLE
ASSAY
162 results
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ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
STARR-seq
ChIP-seq
Hi-C
whole genome sequencing assay
tissue
kidney
75
49
11
6
islet of Langerhans
1
1
cell line
HepG2
9
2
4
1
HEK293T
2
Synthesized DNA
1
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