Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
9
total RNA-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
Hi-C
1
whole genome sequencing assay
Assay category
18
DNA binding
9
Transcription
1
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
34
August, 2021
5
February, 2023
Available data
14
bed narrowPeak
14
bigWig
9
tsv
1
bedpe bed3+
1
hic
1
vcf
Organism
39
Homo sapiens
Biosample type
239
primary cell
56
tissue
47
in vitro differentiated cells
39
cell line
Organ
31
liver
2
kidney
Project
34
AMP
5
T1D
Genome assembly (visualization)
15
hg19
Lab
615
AMP-T2D consortium
34
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
39 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
Hi-C
whole genome sequencing assay
cell line
HepG2
18
9
2
1
1
EndoC_BH1
3
2
HEK293T
2
Synthesized DNA
1
See all biosamples
Download