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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
5
STARR-seq
3
Hi-C
1
ATAC-seq
1
whole genome sequencing assay
Assay category
14
DNA binding
3
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
11
transcription factor
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
22
August, 2021
2
March, 2019
Available data
14
bed narrowPeak
14
bigWig
tsv
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
24
Homo sapiens
Biosample type
21
cell line
3
tissue
Organ
18
liver
3
pancreas
2
kidney
Project
24
AMP
Genome assembly (visualization)
17
hg19
1
GRCh38
Lab
2101
AMP-T2D consortium
318
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
24
Bing Ren, UCSD
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
5
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
files.file_type!
tsv
target.investigated_as!
control
BIOSAMPLE
ASSAY
24 results
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ChIP-seq
STARR-seq
Hi-C
ATAC-seq
whole genome sequencing assay
cell line
HepG2
14
2
1
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
2
1
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