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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
10
total RNA-seq
5
STARR-seq
3
Hi-C
1
ATAC-seq
Assay category
15
DNA binding
10
Transcription
3
3D chromatin structure
1
DNA accessibility
Target of assay
11
transcription factor
4
control
3
histone
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
32
August, 2021
2
March, 2019
Available data
11
bed narrowPeak
11
bigWig
10
tsv
2
bedpe bed3+
2
hic
1
bedpe
vcf
Organism
34
Homo sapiens
Biosample type
30
cell line
4
tissue
Organ
27
liver
4
pancreas
2
kidney
Project
34
AMP
Genome assembly (visualization)
14
hg19
1
GRCh38
Lab
3067
AMP-T2D consortium
324
Klaus Kaestner, Upenn
209
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
34
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
files.file_type!
vcf
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
34 results
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ChIP-seq
total RNA-seq
STARR-seq
Hi-C
ATAC-seq
cell line
HepG2
15
9
2
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
2
1
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