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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
total RNA-seq
22
ATAC-seq
18
ChIP-seq
5
STARR-seq
3
Hi-C
1
whole genome sequencing assay
Assay category
30
Transcription
22
DNA accessibility
18
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
40
May, 2022
36
August, 2021
2
March, 2019
1
October, 2017
Available data
35
bigWig
34
bed narrowPeak
10
tsv
2
bedpe bed3+
2
hic
1
bed broadPeak
1
bedpe
1
fastq
1
vcf
Organism
79
Homo sapiens
Biosample type
45
tissue
34
cell line
Organ
71
liver
5
pancreas
2
kidney
Project
79
AMP
Genome assembly (visualization)
38
hg19
2
GRCh38
Lab
3912
AMP-T2D consortium
343
Kyle Gaulton, UCSD
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
79 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
STARR-seq
Hi-C
whole genome sequencing assay
tissue
liver
20
20
islet of Langerhans
1
2
2
cell line
HepG2
9
18
2
1
1
HEK293T
2
Synthesized DNA
1
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