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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
10
total RNA-seq
5
STARR-seq
Hi-C
1
ATAC-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
18
DNA binding
14
Transcription
1
DNA accessibility
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
34
August, 2021
4
March, 2023
1
March, 2019
Available data
14
bed narrowPeak
14
bigWig
10
tsv
1
vcf
Organism
35
Homo sapiens
Biosample type
35
cell line
2
stem cell
2
tissue
Organ
30
liver
2
kidney
2
pancreas
Project
35
AMP
4
community
Genome assembly (visualization)
15
hg19
1
GRCh38
Lab
3886
AMP-T2D consortium
343
Kyle Gaulton, UCSD
321
Klaus Kaestner, Upenn
141
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
35
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_title!
Hi-C
BIOSAMPLE
ASSAY
39 results
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ChIP-seq
total RNA-seq
STARR-seq
ATAC-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG2
18
9
2
1
EndoC-BH1
1
1
HEK293T
2
Synthesized DNA
1
stem cell
SB Ad3.1
1
1
tissue
islet of Langerhans
1
1
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