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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
total RNA-seq
5
STARR-seq
4
ChIP-seq
3
Hi-C
1
ATAC-seq
1
whole genome sequencing assay
Assay category
30
Transcription
4
DNA binding
3
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
4
control
Date released
22
August, 2021
20
May, 2022
2
March, 2019
Available data
34
bed narrowPeak
bigWig
10
tsv
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
44
Homo sapiens
Biosample type
24
tissue
20
cell line
Organ
37
liver
4
pancreas
2
kidney
Project
44
AMP
Genome assembly (visualization)
3
hg19
1
GRCh38
Lab
1053
AMP-T2D consortium
314
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
123
Kyle Gaulton, UCSD
47
KPMP
24
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
1
Maike Sander, UCSD
Audit category:
1
inconsistent ontology term
files.file_type!
bigWig
BIOSAMPLE
ASSAY
44 results
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total RNA-seq
STARR-seq
ChIP-seq
Hi-C
ATAC-seq
whole genome sequencing assay
tissue
liver
20
islet of Langerhans
1
2
1
cell line
HepG2
9
2
4
1
1
HEK293T
2
Synthesized DNA
1
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