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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
total RNA-seq
ATAC-seq
18
ChIP-seq
2
STARR-seq
1
Hi-C
1
whole genome sequencing assay
Assay category
29
Transcription
18
DNA binding
1
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
31
August, 2021
20
May, 2022
Available data
14
bed narrowPeak
14
bigWig
9
tsv
1
bedpe bed3+
1
hic
1
vcf
Organism
51
Homo sapiens
Biosample type
31
cell line
20
tissue
Organ
51
liver
3
pancreas
2
kidney
Project
51
AMP
Genome assembly (visualization)
15
hg19
Lab
717
AMP-T2D consortium
31
Bing Ren, UCSD
20
Karen Mohlke, UNC
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
51 results
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total RNA-seq
ChIP-seq
STARR-seq
Hi-C
whole genome sequencing assay
cell line
HepG2
9
18
2
1
1
tissue
liver
20
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