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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
total RNA-seq
21
ATAC-seq
15
ChIP-seq
5
STARR-seq
3
Hi-C
1
whole genome sequencing assay
Assay category
30
Transcription
21
DNA accessibility
15
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
40
May, 2022
33
August, 2021
2
March, 2019
Available data
31
bed narrowPeak
31
bigWig
10
tsv
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
75
Homo sapiens
Biosample type
44
tissue
31
cell line
Organ
68
liver
4
pancreas
2
kidney
Project
75
AMP
Genome assembly (visualization)
34
hg19
1
GRCh38
Lab
3068
AMP-T2D consortium
324
Klaus Kaestner, Upenn
209
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
35
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
5
Patrick T. Ellinor, Broad
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
target.investigated_as!
histone
BIOSAMPLE
ASSAY
75 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
STARR-seq
Hi-C
whole genome sequencing assay
tissue
liver
20
20
islet of Langerhans
1
1
2
cell line
HepG2
9
15
2
1
1
HEK293T
2
Synthesized DNA
1
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