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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
10
snATAC-seq
10
total RNA-seq
9
single cell RNA-seq
5
STARR-seq
1
ATAC-seq
1
Hi-C
1
whole genome sequencing assay
Assay category
19
Transcription
18
DNA binding
11
DNA accessibility
1
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
35
August, 2021
19
April, 2020
1
March, 2019
Available data
14
bed narrowPeak
14
bigWig
10
tsv
2
bedpe bed3+
hic
1
bedpe
1
vcf
Organism
54
Homo sapiens
Biosample type
33
cell line
22
tissue
Organ
30
liver
19
lung
3
pancreas
2
kidney
Project
36
AMP
19
LungMap
Genome assembly (visualization)
15
hg19
1
GRCh38
Lab
3896
AMP-T2D consortium
343
Kyle Gaulton, UCSD
321
Klaus Kaestner, Upenn
141
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
36
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
files.file_type!
hic
BIOSAMPLE
ASSAY
55 results
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ChIP-seq
snATAC-seq
total RNA-seq
single cell RNA-seq
STARR-seq
ATAC-seq
Hi-C
whole genome sequencing assay
cell line
HepG2
18
9
2
1
HEK293T
2
Synthesized DNA
1
tissue
lung
10
9
islet of Langerhans
1
1
1
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